基于高通量测序Survey评估测定雷竹基因组大小

基金项目:

江西省林业科技创新专项（202119）

Genome Survey of Phyllostachys violascens ‘Prevernalis’ Based on High-thoughput Squencing

摘要: 为研究雷竹基因组信息，基于高通量测序，利用Illumina测序平台对雷竹基因组进行了分析，采用K-mer法预测雷竹基因组大、杂合度和重复序列等基因组特征，结果表明：雷竹基因组大小约为1 913 Mb，修正后为1 897 Mb，杂合率为1.7%，重复序列比例为69.38%。
- 雷竹 /
- 高通量测序 /
- K-mer分析 /
- 基因组大小 /
- 杂合度
Abstract: Based on high-throughput sequencing,the genome of Phyllostachys violascens ‘Prevernalis’ was analyzed by Illumina sequencing platform,in order to study its genomic information. The K-mer method was used to predict its genomic characteristics, such as genome size, heterozygosity and repetitive sequence. The results showed that the size of Phyllostachys violascens ‘Prevernalis’ genome was about 1 913 mb, the revised size was 1 897 mb, the heterozygosity rate was 1.7%, and the proportion of repetitive sequence was 69.38%.
- Phyllostachys violascens ‘Prevernalis’ /
- High-thoughput Squencing /
- K-mer analysis /
- Genome Size /
- Heterozygosity

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